I am trying to launch a job in the cluster but it keeps saying:
AssocGrpCPUMinutesLimit
I have looked at the ipop-up partitoins are either idle or mixed.
Here is my sbatch script:
#!/bin/bash
#SBATCH --job-name=so_cut_run_driver
#SBATCH --partition=ipop-up
#SBATCH --cpus-per-task=4
#SBATCH --mem=4G
#SBATCH --time=03:00:00
#SBATCH --output=snakemake_driver.out
#SBATCH --error=snakemake_driver.err
module load snakemake
snakemake --snakefile snakefile \
–jobs 50 \
–cluster “sbatch --partition=ipop-up --cpus-per-task={threads} --mem={resources.mem_mb}M --time={resources.time} --output=slurm-%x-%j.out --error=slurm-%x-%j.err” \
–latency-wait 60 \
–rerun-incomplete \
–printshellcmds \
–reason
Is there a problem with this? I am running the project in my project dir
(cut_snake) [odette@ipop-up so_]$ squeue -u odette
JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON)
27365981 ipop-up so_cut_r odette PD 0:00 1 (AssocGrpCPUMinutesLimit)