I have entered a number of jobs for determining how Rab3A (3rab.pdb) interacts with the DAMH domain of CAPS (6a68.pdb). I have usually entered the pdb files indicated in ( ). In all cases, the jobs have been killed or indicated to have errors or have stalled.
Because reports indicated that 6a68.pdb might have errors (homoatm), in one case, we entered a modified version 6a6b.pdb after taking it through homology modeling to fill in aa that may be missing in crystal structure.
We have done this under InterEvDock3 and, in one case, under InterEvDock2, but in all cases the jobs have failed. I think we are either not entering correct pdb files, or alternatively, the jobs time out because they stall at certain steps where our additional input may be needed.
Do jobs get killed if they take too much time on server? How do I restart a killed job?
Any advice would be appreciated.
TF Martin
tfmartin@wisc.edu
Session information:
- id: f1f2c25979ac21f03a6b89e3831dbe3c
- email: tfmartin@wisc.edu
- activated?: True
- authenticated?: True
Job information:
- id: RPBS Web Portal
- date: Tue, 05 Sep 2023 22:20:57 +0000
- status: killed
- user error in parameter: None
- user error message: None