My run with the following link RPBS Web Portal was cancelled. I would like to know why.
Thank you in advance.
V.
Session information:
Job information:
Hello,
your job timed out as the FRODOCK docking step took almost 24hours (sorry for the not-very-explicit error message).
In this case you can use the “hot restart” option of InterEvDock3, i.e. use the Advanced options submission form and input your jobid in the “hot restart” field. It will shortcut the steps already performed (coMSA building, docking) and restart at the clustering step.
In case it times out again, a few things to consider: protein A should usually be the largest to reduce docking time; you might want to consider removing long disordered segments/loops before docking (ideally restrict the input structure to the region known to be interacting) as no flexibility will be introduced in InterEvDock3 (rigid-body only).
Hope that helps.
Best regards,
Jessica