Dear developers,
Can you please explain what happened and what can I do to prevent this error?
Session information:
Job information:
Hello,
thanks for your interest in InterEvDock3.
Sorry that the error message is not very explicit, what actually happened is that FRODOCK timed out after 24 hours because the proteins are too large.
You can try again exchanging proteins A and B (protein A should be the largest since it remains fixed during docking), but I am not sure that it will succeed since both proteins are large.
Best regards
I just realized that protein A is actually already the largest, so what I said will not apply.
In this case, you could try to reduce the protein size by removing any regions you know should form long disordered tails, or using only a domain from the protein.