help on job https://mobyle.rpbs.univ-paris-diderot.fr/data/jobs/PEP-FOLD3/S08779578172922.

Hi there,

I have two concerns that I would like some guidance on:

  1. When I upload my receptor pdb and paste my binding patch, once I run the job, the receptor and binding patch entries get the annotation (not detected) and this makes me concerned that they’re not being processed right since the peptides’ fasta file doesn’t receive this annotation.
  2. When it comes to uploading the binding patch, the instructions say to paste one residue per line in the format A_THR_1_ but the example shows the residues as being comma separated and ending with a full stop as follows: A_THR_1,A_THR_2,A_THR_3. The only version of an upload I can get to work is actually one where a space follows the commas: A_THR_1, A_THR_2, A_THR_3. This really contrasts with both the instruction and the example so I am concerned that my job is not being run right.

Could you offer some advice on both of these issues?

Kind regards,
Sabina

Session information:

  • id: Q20122619079113
  • email: None
  • activated?: True
  • authenticated?: False

Job information:

  • id: RPBS Web Portal
  • date: Mon, 08 Jul 2024 14:52:11 +0000
  • status: finished
  • user error in parameter: None
  • user error message: None